PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0008s0889.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family HSF
Protein Properties Length: 191aa    MW: 22179.5 Da    PI: 9.7267
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0008s0889.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind102.34.2e-32141032100
                          HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXX CS
         HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkk 91 
                          Fl+k++e++e++e++ ++swse  nsf+v+d  ef   vLpkyFkh+nf+SF+RQLn+YgF+kv+ ++          eF+++sF  g++
  Kaladp0008s0889.1.p  14 FLTKIFEMVENPETDPVVSWSEARNSFIVWDYIEFLAVVLPKYFKHNNFSSFIRQLNTYGFRKVDPDR---------YEFANESFLGGQR 94 
                          9*****************************************************************99.........78*********** PP

                          XXXXXXXXX CS
         HSF_DNA-bind  92 ellekikrk 100
                          +ll++ikr 
  Kaladp0008s0889.1.p  95 HLLRTIKRW 103
                          *******95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.6E-35897IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.77E-3210102IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004159.5E-5210103IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.3E-191437IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004477.6E-2914102IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.3E-195264IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405377IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.3E-196577IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 191 aa     Download sequence    Send to blast
MEGLLLQGAG PPPFLTKIFE MVENPETDPV VSWSEARNSF IVWDYIEFLA VVLPKYFKHN  60
NFSSFIRQLN TYGFRKVDPD RYEFANESFL GGQRHLLRTI KRWRHVGLSS QLEGVVGVSG  120
LEGFEDEIGI LKRERKMLLT EVLRLKQQQL DAKEHMVGMQ ERLLRTEKKQ QQIARFLSRV  180
VSNPSFWSSF *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A2e-27910212119Heat shock factor protein 1
5d5u_B2e-27910221128Heat shock factor protein 1
5d5v_B2e-27910221128Heat shock factor protein 1
5d5v_D2e-27910221128Heat shock factor protein 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004291051.16e-80PREDICTED: heat shock factor protein HSF30 isoform X1
RefseqXP_004291052.15e-80PREDICTED: heat shock factor protein HSF30 isoform X2
SwissprotO809825e-75HSFA2_ARATH; Heat stress transcription factor A-2
TrEMBLM5XZ212e-77M5XZ21_PRUPE; Uncharacterized protein
STRINGGLYMA17G34540.27e-75(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26150.12e-68heat shock transcription factor A2